For the Fisheries Commission to effectively and efficiently perform its mandate, it is organized internally into seven (7) Divisions and three (3) special units, namely:
Marine Fisheries Management Division (MFMD)
- Small Scale Fisheries Unit /Section (Canoe and Inshore)
- Industrial Fisheries Unit /Section (Trawlers and Tuna)
Inland Fisheries Management Division (IFMD)
- Freshwater unit
- Lagoon unit
Fisheries Scientific Survey Division (FSSD)
- Environment and Climate Change unit
- Fish stock, Biology and Statistics unit
- Fishing gears and methods unit
Aquaculture
- Freshwater Culture
- Mariculture unit
Monitoring, Control, and Surveillance Division (MCSD)
- Fisheries monitoring centre unit
- Fisheries enforcement unit
- Inspections unit
Finance and Administration Division (F&A)
- Human Resource unit
- Corporate Affairs unit
- Information Technology unit
- Procurement unit
- General Administration unit
Planning, Budget, Monitoring and Evaluation Division (PBMED)
- Planning unit
- Budget unit
- Monitoring and Evaluation unit
Post-Harvest Management and Trade Division (PHMTD)
- Post-Harvest Management unit
- Fish Trade unit
SPECIAL UNITS
- Legal and Compliance unit
- Aquatic Animal Health unit
- Internal Audit unit